So I discovered when using the hooks for VFB Pro.
Without the hooks the reply-to address shows whats set in the form regardless if it matches the admin email or not (EX: noreply@mydomain.com).
When I use the hooks (The two I used so far is the email overide and instruction fields include) the reply to comes through as wordpress@mydomain.com on behalf of noreply@mydomain.com.
Like I said without the hooks this doesn't happen. Is this a bug perhaps?